PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0127200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

YABBY

Protein Properties

Length: 167aa MW: 18538.6 Da PI: 5.0442

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0127200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	170.6	1e-52	8	157	4	159
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvs 97 f+ seq+Cyv+C+fC+til+vsvP +sl+kvvtvrCGhC llsv+++ + s l+ + k+el ++ + + + e ++++ Spipo0G0127200 8 FNLSEQLCYVHCGFCTTILLVSVPCSSLSKVVTVRCGHCQGLLSVDMSSVPLVpWQLLSSLGVDEKKELIP-------HIPVDHGEGEPVAEEQE 95 789***************************************999876533122333444444444444.......44444444444444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + e+++ +vp v++PPekrqr+Psayn+fikeei+rik +P i+h+eafs+aakn Spipo0G0127200 96 EQDEGEEQEADVPTNTVVNKPPEKRQRAPSAYNCFIKEEIKRIKGRDPGITHKEAFSTAAKN 157 44446778899999999******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.9E-54	10	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-5	112	154	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSTRSPFFNL SEQLCYVHCG FCTTILLVSV PCSSLSKVVT VRCGHCQGLL SVDMSSVPLV 60 PWQLLSSLGV DEKKELIPHI PVDHGEGEPV AEEQEEQDEG EEQEADVPTN TVVNKPPEKR 120 QRAPSAYNCF IKEEIKRIKG RDPGITHKEA FSTAAKNXXX XXXXXXX

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894702.1	5e-57	axial regulator YABBY 4 isoform X1
Refseq	XP_024934431.1	3e-57	axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	1e-43	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A067K496	1e-54	A0A067K496_JATCU; Uncharacterized protein
TrEMBL	A0A1S3VQ60	2e-54	A0A1S3VQ60_VIGRR; axial regulator YABBY 4 isoform X3
TrEMBL	D7TDI7	1e-54	D7TDI7_VITVI; Uncharacterized protein
STRING	VIT_01s0127g00330.t01	2e-55	(Vitis vinifera)
STRING	XP_007157432.1	1e-54	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-42	YABBY family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0127200

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]