PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0130300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 202aa    MW: 23242.4 Da    PI: 8.6806
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0130300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21666257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Spipo0G0130300  6 STRWCPTPEQLMILEEMYRSgVRTPNASQIQQITAHLsyygKIEGKNVFYWFQNHKARDRQ 66
                    58*****************99*************************************996 PP
2Wus_type_Homeobox122.81.4e-39667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
     Spipo0G0130300  6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQQITAHLSYYGKIEGKNVFYWFQNHKARDRQK 67
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.09267IPR001356Homeobox domain
SMARTSM003892.4E-5471IPR001356Homeobox domain
CDDcd000862.63E-4567No hitNo description
PfamPF000461.1E-18666IPR001356Homeobox domain
SuperFamilySSF466899.84E-12767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-8866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MPQVPSTRWC PTPEQLMILE EMYRSGVRTP NASQIQQITA HLSYYGKIEG KNVFYWFQNH  60
KARDRQKLRR RLSRHQQMLQ QHQMMNQQTP QLHQMEPFRS PLQQHQIPHQ ITPQFLQQDA  120
PEVMNLVGKL ETCGRDDGTE RPSAGCSASY GYEWMMVTEA SSPVPPCCRP LKTLELFPTQ  180
STRLKEECST SKSSSCSTST N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019702890.14e-75WUSCHEL-related homeobox 3
TrEMBLA0A2H3WZS33e-70A0A2H3WZS3_PHODC; WUSCHEL-related homeobox 3B-like
STRINGXP_008776170.15e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-35WOX family protein