PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0138300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 511aa MW: 54448.5 Da PI: 6.7951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0138300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	323	370	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Spipo0G0138300 323 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 370 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.18E-10	317	374	No hit	No description
SuperFamily	SSF47459	1.31E-16	317	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.256	319	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-16	319	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	323	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-9	325	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MEEKIFECPP QLSGAAAAGG GDQLPPCFVH FNWDSAVDQN AGAHFESALS SMVSSPSSTN 60 PAPAGAENLV IRELIGRLGS ICNSGEISPQ SHRYGGGAAT SCYSTPLNSP PKLNLSNMAD 120 HLPRLGNSAP PPPPPLTTHL MAFAADPEFA ERAARLSCFG GRCYGGQTGL SRVSSSQSLM 180 AAPPDGSQLE VDMRSRLSST RLSRSSTPDD AEFGGAREEE QPPPAPAAQQ SSRARNDGSA 240 GRKRKTAPKG KAKAAAAEDS NAKRSKSEES AGAGEDDVQP QQPKAEPNSD SGDDKGSNSK 300 PPAEPPKQDY IHVRARRGQA TDSHSLAERV RREKISQRMK FLQDLVPGCN KVTGKALMLD 360 EIINYVQSLQ RQVEFLSMKL ATVNPRLDFN VESLLPKGIN QSRGSLPHSV FPPPETASPA 420 FPFAQQETPL QSIVTGGGME SHSPMNHHTH HHHHHHHPLA GFMDASSQLV TFWEDDLHSV 480 VQMGAVQNQE AALSSLSFPS TAATHMTVQL *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MEEKIFECPP QLSGAAAAGG GDQLPPCFVH FNWDSAVDQN AGAHFESALS SMVSSPSSTN  60
PAPAGAENLV IRELIGRLGS ICNSGEISPQ SHRYGGGAAT SCYSTPLNSP PKLNLSNMAD  120
HLPRLGNSAP PPPPPLTTHL MAFAADPEFA ERAARLSCFG GRCYGGQTGL SRVSSSQSLM  180
AAPPDGSQLE VDMRSRLSST RLSRSSTPDD AEFGGAREEE QPPPAPAAQQ SSRARNDGSA  240
GRKRKTAPKG KAKAAAAEDS NAKRSKSEES AGAGEDDVQP QQPKAEPNSD SGDDKGSNSK  300
PPAEPPKQDY IHVRARRGQA TDSHSLAERV RREKISQRMK FLQDLVPGCN KVTGKALMLD  360
EIINYVQSLQ RQVEFLSMKL ATVNPRLDFN VESLLPKGIN QSRGSLPHSV FPPPETASPA  420
FPFAQQETPL QSIVTGGGME SHSPMNHHTH HHHHHHHPLA GFMDASSQLV TFWEDDLHSV  480
VQMGAVQNQE AALSSLSFPS TAATHMTVQL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029117287.1	1e-146	transcription factor bHLH62
TrEMBL	A0A1D1XMA9	0.0	A0A1D1XMA9_9ARAE; Transcription factor bHLH62
STRING	EOY05079	1e-141	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0138300