PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0138900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 196aa    MW: 21327.7 Da    PI: 6.5197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0138900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-193585155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Spipo0G0138900 35 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 85
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-133585IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-323694IPR001471AP2/ERF domain
PROSITE profilePS5103223.4333693IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-223694IPR016177DNA-binding domain
SMARTSM003808.8E-373699IPR001471AP2/ERF domain
PRINTSPR003671.8E-103748IPR001471AP2/ERF domain
CDDcd000181.66E-323795No hitNo description
PRINTSPR003671.8E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
SLHNPLSGTS SGATGDSSPD EKKAAKRTRD SSKHPVYRGV RMRNWGKWVS EIREPRKKSR  60
IWLGTFPTPE MAARAHDVAA LSIKGSAAVL NFPELAHSLP RPETLSPRDV QAAAAKAAAM  120
EPKSALCSSS ATTPTSDDLD EIVELPRLGP SFFEPSELGN EFVFHESGES WSSYSPPWME  180
SADDYETFGD SHKNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-193193972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775170.16e-72ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-68DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2H3WXH51e-70A0A2H3WXH5_PHODC; ethylene-responsive transcription factor TINY-like
STRINGXP_008775170.12e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]