PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0139300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 113aa    MW: 11960.7 Da    PI: 7.5136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0139300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-14239847
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     Ed +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
   Spipo0G0139300  2 EDRIILAAHAVHGNK-WAAIARLLE-GRTDNAIKNHWNST 39
                     99*************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6E-7142IPR001005SANT/Myb domain
PROSITE profilePS5129423.226144IPR017930Myb domain
SuperFamilySSF466894.45E-12243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-17241IPR009057Homeodomain-like
CDDcd001672.49E-10240No hitNo description
PfamPF002491.5E-11239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
AEDRIILAAH AVHGNKWAAI ARLLEGRTDN AIKNHWNSTL KRRCLEAVAV GVGQTGLLQK  60
VDALLVSIAT DLSYVAWLKS GLEGDNAKVL ESSLQWTMSS DACPILPSPA TG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1624466108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931159.12e-22transcription factor MYB1
RefseqXP_026663641.11e-22transcription factor MYB1-like
TrEMBLA0A3Q0I9F93e-21A0A3Q0I9F9_PHODC; transcription factor MYB1-like
STRINGXP_008345508.12e-21(Malus domestica)
STRINGXP_008370028.12e-21(Malus domestica)
STRINGXP_008801382.15e-22(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-20myb domain protein 109