PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0146500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 239aa    MW: 26523.3 Da    PI: 8.9781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0146500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057493120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    ++C+ C+k+F+r  n++ H+
  Spipo0G0146500 74 FSCSVCNKTFNRYNNMQMHM 93
                    89*****************9 PP
2zf-C2H215.45.5e-05158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  CgksF  + + ++H +++
  Spipo0G0146500 158 FSCRRCGKSFAVRGDWRTHEKNC 180
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-56697No hitNo description
Gene3DG3DSA:3.30.160.602.9E-67493IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128745.8E-57493No hitNo description
SMARTSM003550.0717496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55474101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355230121153IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.58E-6140178No hitNo description
Gene3DG3DSA:3.30.160.603.2E-6144178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556158178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVAEETSQKW KGLGEVDLNI GLPGLSEDSD GEAKSLVCDE VEVGGKMSGR HHPAPENRFW  60
IPTPAQILMG PILFSCSVCN KTFNRYNNMQ MHMWGHGPEY RKGPESLRGA QPAAMLKLPC  120
YCCADGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFSC RRCGKSFAVR GDWRTHEKNC  180
GKLWICACGS DFKHKRSLKD HIRSFGGSSV SHHFHAAFGK DCRFMETSSG GEVVEGGV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277045.11e-108PREDICTED: zinc finger protein WIP3
SwissprotQ8W0302e-97ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A438FPJ81e-108A0A438FPJ8_VITVI; Zinc finger protein WIP3
TrEMBLA0A438HR811e-108A0A438HR81_VITVI; Zinc finger protein WIP3
STRINGVIT_06s0080g00270.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.14e-97WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]