PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0146700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23661.9 Da    PI: 8.7842
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0146700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-184194356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k++++++eq++ Le  F ++r++   ++  LA++lgL+ +qV vWFqNrRa++k
  Spipo0G0146700 41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWK 94
                    56689************************************************9 PP
2HD-ZIP_I/II120.87e-3941132293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls+eqvk+LE++F +e+kLe+ rKv la+eLgl+p+qvavWFqnrRAR+k+kqlE++y +Lk+ ++a++ e+++Le+ev +L+e+l+e
  Spipo0G0146700  41 KKRRLSDEQVKFLEMNFGRERKLESGRKVYLATELGLDPKQVAVWFQNRRARWKSKQLEEEYVRLKSMHEAVVLEKCHLEAEVLKLKEQLSE 132
                     9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.0993696IPR001356Homeobox domain
SMARTSM003891.4E-1539100IPR001356Homeobox domain
CDDcd000861.23E-144197No hitNo description
PfamPF000461.1E-154194IPR001356Homeobox domain
SuperFamilySSF466898.13E-1741102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1843102IPR009057Homeodomain-like
PRINTSPR000314.9E-56776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000314.9E-57692IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSEAAHLEDK MLLSAQLPEG ERSRARRRRR KGRGEAAGEA KKRRLSDEQV KFLEMNFGRE  60
RKLESGRKVY LATELGLDPK QVAVWFQNRR ARWKSKQLEE EYVRLKSMHE AVVLEKCHLE  120
AEVLKLKEQL SEARKEMKKV SASGSSDDVS CGERGSSSPS SSFSVEAQQP LLGELGVERG  180
AELMFMHDYY YDNCVNIMDW PNLYGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12643RRRRKGRGEAAGEAKKRR
22843RRKGRGEAAGEAKKRR
38896RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905085.11e-64homeobox-leucine zipper protein HOX12
SwissprotQ7XI859e-48HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A1D1YT254e-77A0A1D1YT25_9ARAE; Homeobox-leucine zipper protein ATHB-21
STRINGXP_008795628.17e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-41homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]