PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0151100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Protein Properties

Length: 201aa MW: 22259.3 Da PI: 11.1366

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0151100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.5	8.8e-12	87	144	31	86
.--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 +++ + ++de+gr+++v + r ++ + ++ ++GW +F+k+n+L++gD++ F++++ Spipo0G0151100 87 GRGVAIAIQDEHGRRYSVFWRRRTNGTTsyMICGAGWAHFAKDNQLNTGDVLRFYFSR 144 477899**********9966333333556778*******************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-10	46	143	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.9E-9	87	144	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.0E-10	87	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.30E-10	88	145	No hit	No description
PROSITE profile	PS50863	10.461	92	162	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MARVKRATAG SSSHDTAVHR HHHRRPSGKK ARASSPPPPF TSCCLFERKI YGVDLGQMKD 60 GLRVAQEKAA AVGRVLMEEE KALADSGRGV AIAIQDEHGR RYSVFWRRRT NGTTSYMICG 120 AGWAHFAKDN QLNTGDVLRF YFSRAVPREG SGRLYLGIRI IRPAPPPRRH NHHQRPSRPP 180 EEVLPVLPGY SSPPEHSSPG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	7e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0151100