PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0154000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 330aa    MW: 34777.6 Da    PI: 6.0533
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0154000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.14e-1220561450
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ++R +g+ KKA ELS+LC+++v+++ +   g ++ ++
  Spipo0G0154000 20 ARREQGLKKKAAELSTLCGVDVCIVGYNDAGDFFSWP 56
                    7899******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.06E-111872IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3021955IPR002100Transcription factor, MADS-box
CDDcd001203.24E-102156No hitNo description
PfamPF003191.2E-112155IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASASATKRG AQRRGKKPWA RREQGLKKKA AELSTLCGVD VCIVGYNDAG DFFSWPDDLN  60
EVERIAGRLK EQQGIGAGQG PARKRKMGAS TSALTTAPKR GKGASKAPVC PQNSGGDRRP  120
QSPDVQLCLD VLDAEEPMAF WRRILEMTSG VSGPTTDDLG LAEIIPSSPV SPPWNQAACE  180
GGASAIRPVD ASEATTGILV AAGVTSMIPP PLLPPLEISD DLLPVGACWG SSPWNGEYAG  240
DFSATSSWPF FQRPAFADVA FRCPSPEELL WGVPSMSGGR TLEMEAQRSC LCSCQAALGV  300
PGLIPFPHRL LPPPAALPFS AANLGWTYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11528KKPWARREQGLKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.11e-09AGAMOUS-like 51