PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0155800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WRKY

Protein Properties

Length: 253aa MW: 27351.4 Da PI: 6.2854

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0155800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	7.3e-31	63	121	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY eHnh+ Spipo0G0155800 63 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPSMLVITYACEHNHP 121 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	60	123	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-26	61	123	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	62	122	IPR003657	WRKY domain
PROSITE profile	PS50811	31.973	63	123	IPR003657	WRKY domain
Pfam	PF03106	2.9E-26	64	121	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDGSFSAKDD DSNSSKFEIP NGGSRPCSGR RSVQKRVVSI PITEAEGSRA KGGGSDGGGA 60 PPSDSWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRADPSML VITYACEHNH 120 PWPLPKNQQQ QQQQQQKEGI HRRQPPPPPI FAADLSLTMM ADEFGWFSAV STSPPAGDAF 180 LGGPIGGDGA LMIPPASDQE ADDFTGSEGG APPEEEEALF AGLGELPECA VVFRRGFLDR 240 RIRMQIDGKD DRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	35	123	6	79	Disease resistance protein RRS1
5w3x_D	1e-20	35	123	6	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098317.1	5e-68	probable WRKY transcription factor 65
Swissprot	Q9LP56	3e-59	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2I0AMQ9	2e-68	A0A2I0AMQ9_9ASPA; Putative WRKY transcription factor 65
STRING	Aquca_039_00057.1	4e-62	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-40	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Spipo0G0155800

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]