PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0156300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 187aa    MW: 20394.8 Da    PI: 8.7383
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0156300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.3e-24133181149
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                     +Cq+egC+adls ak+yhrrhkvCe hska+vv++ g++qrfCqqCsr+
  Spipo0G0156300 133 RCQAEGCKADLSVAKHYHRRHKVCELHSKATVVVAGGMQQRFCQQCSRW 181
                     6**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-24128181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.7131186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-22132181IPR004333Transcription factor, SBP-box
PfamPF031105.9E-18134181IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVSFAGLEST SSSNGSHKPQ QQQMWDWESA AAQTHHAADL QHQPPLFTAT AVNSSPYSFP  60
PMGIGSGGGY PFHSIVAEDY PAAFIKNEDD RGVGQIGLNL GRRTYFPSGE AAAIEQLFRR  120
SRGIYQVGQQ AARCQAEGCK ADLSVAKHYH RRHKVCELHS KATVVVAGGM QQRFCQQCSR  180
WVSSLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A3e-18131181353squamosa promoter-binding protein-like 12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928678.19e-52squamosa promoter-binding-like protein 10
TrEMBLA0A0K9PJ446e-53A0A0K9PJ44_ZOSMR; Uncharacterized protein
TrEMBLA0A1D1YD442e-54A0A1D1YD44_9ARAE; Squamosa promoter-binding-like protein 10 (Fragment)
STRINGGSMUA_Achr7P08750_0019e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.25e-36squamosa promoter binding protein-like 8