PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0165200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

YABBY

Protein Properties

Length: 170aa MW: 18458 Da PI: 6.0592

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0165200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	128	1.3e-39	15	170	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 ++e++Cyv+C+fC+t+lavsvP +slfk+vtvrCGhCt+llsvn +++ ll+a ++l++s + + +l e + e+ a ++++ Spipo0G0165200 15 ATEKLCYVHCSFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVN--MRALLLPAANQLHHSDTFLipAHTNLLEEFSCPPIPLLPEQPALPNEAM 107 689*************************************65..6677888888887765544114555444444444444555555544444 PP YABBY 99 eklsenedeevprvpp......virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + ++e+ ++pp P q P+ + f +eeiqrika+nPdi+hreafsaaakn Spipo0G0165200 108 AP--VKGTQEINQTPPhlglsgRTSNPITNQDDPT--DSFDREEIQRIKAGNPDITHREAFSAAAKN 170 44..4444444444442211113445667777775..79*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-40	15	170	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSSAAFAFDH LSPLATEKLC YVHCSFCDTV LAVSVPCSSL FKTVTVRCGH CTNLLSVNMR 60 ALLLPAANQL HHSDTFLIPA HTNLLEEFSC PPIPLLPEQP ALPNEAMAPV KGTQEINQTP 120 PHLGLSGRTS NPITNQDDPT DSFDREEIQR IKAGNPDITH REAFSAAAKN

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787013.1	4e-65	protein YABBY 4-like
Swissprot	Q01JG2	2e-44	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-44	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A1D1YUJ7	1e-74	A0A1D1YUJ7_9ARAE; Protein YABBY 4
STRING	XP_008787013.1	2e-64	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	6e-42	YABBY family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0165200

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]