PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0174900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 363aa    MW: 40005.8 Da    PI: 6.7854
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0174900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35381292102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e+g++f+v+ + +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  Spipo0G0174900  38 FLTKTYQLVDDPAIDDVISWNEDGSTFIVWRPADFAHDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKHLLCD 123
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Spipo0G0174900 124 IHRRKM 129
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-3830122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVPPTAPSAA VAVAVPEPVV ESATPASLDA HRSLPTPFLT KTYQLVDDPA IDDVISWNED  60
GSTFIVWRPA DFAHDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFRRGEKHL  120
LCDIHRRKMQ PPAALPSVPT AIPVAIPVTR VISPTNSSDE QVISPNSSSG GPQSMSTKGG  180
GGTSTELVEE NSRLRKENER LHHELSKMKN LCNSIILLMS KYASQLQPQD QVDVASPGRG  240
GYAQAAEKPT PPPSPLNLMP LTRCSSESDR PCPRDSDDRV PSKEEQSRSP SPRLFGVPIG  300
LKRTRDNNLD EDSADEEPPH RRATEVKREP TDPAAAADSP AEENLRRWRL HSTCRPNQGV  360
CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-243812729129Heat shock factor protein 1
5d5v_B3e-243812729129Heat shock factor protein 1
5d5v_D3e-243812729129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933854.11e-121heat stress transcription factor B-2c
SwissprotQ652B06e-90HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A200QUM81e-112A0A200QUM8_9MAGN; Heat shock factor (HSF)-type
STRINGXP_008790507.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-76heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]