PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0178700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 221aa MW: 23873.1 Da PI: 6.7911

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0178700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	48	94	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+ri+ +++Lr++l + K++Ka+ L kAve++++L Spipo0G0178700 48 VNHREAERRRRERIKLHLDRLRSILACD-----AKVEKASLLAKAVEHVRDL 94 68***********************7.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.24	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	48	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	48	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-13	49	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.98E-7	136	201	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.3E-7	136	200	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAEGRQPHHF GLCESLETPS FFPSSFPPEM SEMGEDEQLQ DRALAATVNH REAERRRRER 60 IKLHLDRLRS ILACDAKVEK ASLLAKAVEH VRDLKQRAAE VGDMDDRLPS ESDEVSVHAA 120 EDGGGGGGRR PILKASLCCE DRSGLLPELA ETLKSLSLRL LRAEISTIGG RIRNVLVVAA 180 EDGGAPAAFL ADALKALADG TGGMDRSKRR RLLGRSATMG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	58	ERRRRE
2	207	211	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271836.1	3e-62	PREDICTED: transcription factor bHLH106-like
Swissprot	Q9LET0	4e-49	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	A0A1D1YUW5	1e-75	A0A1D1YUW5_9ARAE; Putative transcription factor bHLH107
STRING	EOY08809	9e-61	(Theobroma cacao)
STRING	XP_010271836.1	1e-61	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9578	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	5e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0178700

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]