PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0179300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 236aa    MW: 25880.4 Da    PI: 9.8133
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0179300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.8e-3248103357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     +v+Y+eC+kNhAa++G+havDGCgEfmps  ++ +++a+l+CaACgCHRnFHRr  
  Spipo0G0179300  48 HVVYRECMKNHAAAMGSHAVDGCGEFMPSAASDlTDPASLTCAACGCHRNFHRRVL 103
                     799**************************99999********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.9E-2749102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1949101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6151102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-3051101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.4E-16156226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27161226IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-22169225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDLHDDHLRR SPSPPTPVAA AHKLPLVETG PFLPLSFPNG ALRKHGHHVV YRECMKNHAA  60
AMGSHAVDGC GEFMPSAASD LTDPASLTCA ACGCHRNFHR RVLHAGPLAA AVATRHRSHR  120
GEREGEDYGY RSSSTLPQPQ MLVAYSGGLR RGPAFDPSPP GQDGAAPPRK RARTKFSEEQ  180
KQRMKELSER LGWRMQKGDG AMVEQACREI GVSQGVFKVW MHNNKHIFVG AEVWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-171692261774ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173PRKRART
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937133.13e-61zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-56ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1D1YXM71e-61A0A1D1YXM7_9ARAE; ZF-HD homeobox protein At4g24660 (Fragment)
STRINGGSMUA_Achr6P02700_0018e-62(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-55homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]