PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0181900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 225aa    MW: 24609.8 Da    PI: 8.1803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0181900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09133155426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+ ++r G C++Gd C FaHg
  Spipo0G0181900 133 SACQEYRREGSCPRGDACGFAHG 155
                     67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-6128159IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53129157IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-7133155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6134157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGPACTPHQR ELFYRKKRLL LLDLHLPPRR QHLLQSPMSP SPSSPSSPPA PPGGDQAAAA  60
AEEDAARGGG GCEHAQDSPS GGDGCACDEF RMYAFKVRPC ARGRGHDWTS CPFAHSGEKA  120
RRRDPRLFRY SGSACQEYRR EGSCPRGDAC GFAHGVFECW LHPERYRTMP CRDGRACCRK  180
DGRCNHATFH GVAGGGTVWP DLGWVEELVM LLGPLNRLMS CLES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943958.19e-48zinc finger CCCH domain-containing protein 2
SwissprotO823076e-46C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A444BXC26e-46A0A444BXC2_ENSVE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-47C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]