PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0187900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 186aa    MW: 19684.2 Da    PI: 9.1154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0187900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00036991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  Spipo0G0187900 69 FSCNYCRRKFFSSQALGGHQNAH 91
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-66797No hitNo description
PROSITE profilePS5015711.3026996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNRCNVEPSE ATSEVCSQVA SNRSNQEEAT ATSPGKLSLD LSLSSTGESF TGAPPRSGGA  60
PAAMAPRVFS CNYCRRKFFS SQALGGHQNA HKRERTMAKR GLQLSSFPSC PSLASLPLHG  120
SSQVMAMEIK AHALPHREGR RGRAPMLLEE KGDGFFFARS FPGAGIPPSS PAPAPAEELD  180
LTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936878.16e-38zinc finger protein 4
RefseqXP_010936879.16e-38zinc finger protein 4
TrEMBLA0A1D1XY433e-38A0A1D1XY43_9ARAE; Zinc finger protein 4
STRINGXP_008776604.11e-33(Phoenix dactylifera)
STRINGXP_008798432.11e-33(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.18e-25zinc-finger protein 1