PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0189900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 201aa    MW: 20723.4 Da    PI: 7.3872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0189900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.57.1e-10181200322
                     -SS-EEEEEEE--TT-SS-E CS
            WRKY   3 DgynWrKYGqKevkgsefpr 22 
                     D ++WrKYGqK++kgs++pr
  Spipo0G0189900 181 DLWAWRKYGQKPIKGSPYPR 200
                     99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.805174200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-8177200IPR003657WRKY domain
SuperFamilySSF1182907.45E-7178200IPR003657WRKY domain
PfamPF031062.6E-5181200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MCSCFWQKMD ADHGDLGDVV RRGAGGGCGV PPRAGQHVLE LAGFPPPEAS NDDFGDPFSS  60
FRDPLLHDLG GGAAFFGGAD TVAELGQAPV AGSGGNFSRV LQISSATKAA APTVSPPAVL  120
TPSAILSGEM ASTPLDQGEF QISSPPSPDM KRRKSQTKKV VCIPAPPASS SRPGGDVIPP  180
DLWAWRKYGQ KPIKGSPYPR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788702.12e-48probable WRKY transcription factor 14
TrEMBLA0A2H3XTU55e-47A0A2H3XTU5_PHODC; probable WRKY transcription factor 14
STRINGXP_008788702.19e-48(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-23WRKY DNA-binding protein 35