PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0014600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 214aa    MW: 23322.1 Da    PI: 10.4481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0014600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29661359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     Dg+nWrKYGqK+vkgse +rsYY+Ct+a+C++kkkve+ + d++v+e++Y+g Hnh+
  Spipo10G0014600  6 DGFNWRKYGQKQVKGSESSRSYYKCTYASCSAKKKVEHRQ-DGHVLEVIYRGGHNHH 61
                     9*************************************99.***************7 PP
2WRKY36.31.1e-11176197223
                      --SS-EEEEEEE--TT-SS-EE CS
             WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                      +Dgy+WrKYGqK vkg+++pr 
  Spipo10G0014600 176 SDGYRWRKYGQKIVKGNPNPRP 197
                      7*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.656163IPR003657WRKY domain
SMARTSM007748.8E-30462IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-25463IPR003657WRKY domain
SuperFamilySSF1182908.63E-23463IPR003657WRKY domain
PfamPF031066.1E-23661IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-11160198IPR003657WRKY domain
PROSITE profilePS5081114.55170213IPR003657WRKY domain
SuperFamilySSF1182906.67E-9170199IPR003657WRKY domain
SMARTSM007749.6E-4175204IPR003657WRKY domain
PfamPF031067.6E-8177199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKASGDGFNW RKYGQKQVKG SESSRSYYKC TYASCSAKKK VEHRQDGHVL EVIYRGGHNH  60
HPPQKGKFSK ERRPLPGGPS GDHESSTPAN GRPSRAGPPP LKADPSVDGD ACAKRLHCSS  120
DCEADADVKA RGNPGEEPDL KRRLVERPKA APSPVFKTAK EPKVIRQATS ESGSLSDGYR  180
WRKYGQKIVK GNPNPRPLFD KHRPGAAVSV QNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017695965.15e-66probable WRKY transcription factor 4
TrEMBLA0A2H3X0H11e-64A0A2H3X0H1_PHODC; probable WRKY transcription factor 4
STRINGXP_008776488.12e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-44WRKY DNA-binding protein 3