PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo10G0022600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 141aa MW: 15384.5 Da PI: 5.7624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo10G0022600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	98	119	34	55
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 + ls ae+L +A +YI++Lq Spipo10G0022600 98 AERQLSTAEMLDMALDYIRDLQ 119 3455*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.8E-7	77	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-5	94	123	No hit	No description
SuperFamily	SSF47459	2.09E-6	98	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MYGSPTTSRD LNLAFEVASE IPGLPVSSWD DPSLLSDGFV GSLRRARDPP EVQNGDAGIY 60 FSLPKNSPEM ASLLRFQDAV PCKIRAKRGC ATHPRSIAER QLSTAEMLDM ALDYIRDLQE 120 QVKKLSKSKA DCTCLHNDGV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082673.1	9e-39	transcription factor bHLH130-like
Swissprot	Q66GR3	2e-27	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1D1YA11	4e-45	A0A1D1YA11_9ARAE; Transcription factor bHLH130
STRING	TRIUR3_26625-P1	5e-37	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	8e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo10G0022600

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]