PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0047600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 125aa    MW: 13558.2 Da    PI: 9.8561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0047600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.3e-142441055
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +k+g+WvAeIr+p   +kr r++lg++ ++  Aaka++ a  +l+g
  Spipo10G0047600  2 RKWGKWVAEIREP---NKRSRIWLGSYSSPVAAAKAYDTAVYYLRG 44
                     46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-24153IPR001471AP2/ERF domain
PROSITE profilePS5103218.927152IPR001471AP2/ERF domain
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
CDDcd000183.09E-21153No hitNo description
SuperFamilySSF541713.99E-17253IPR016177DNA-binding domain
PfamPF008471.0E-7244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSSPVA AAKAYDTAVY YLRGRSARLN FPNELPPSSP  60
ADDRCGGGEE LSAALIRQKA TEVGARVDAL HSAGQLGEPP ARISAPKNPD LNRRPSPESS  120
DTEL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234821e-43AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAK1077751e-43AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence.
GenBankAP0025361e-43AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149621e-43AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-43CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648850.14e-48ethylene-responsive transcription factor RAP2-9
SwissprotQ9SNE14e-41ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A1D6LLJ99e-47A0A1D6LLJ9_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A1E5VTH61e-46A0A1E5VTH6_9POAL; Ethylene-responsive transcription factor ERF008
TrEMBLA0A3L6EF169e-47A0A3L6EF16_MAIZE; Ethylene-responsive transcription factor ERF008
STRINGPavir.J20437.1.p7e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-43cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]