PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0053700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 215aa    MW: 22827.6 Da    PI: 11.0295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0053700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2241e-075274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC++Cg+ Fs+++ L rH ++H
  Spipo10G0053700 52 YKCGYCGRIFSTREALGRHVKSH 74
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-65075IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.9E-65079No hitNo description
SMARTSM003554.3E-45274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0695279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRIRCRSSPV RDAVAEESES GSTVSSAQST SRAAPKKRTR RSRRPPAPWK EYKCGYCGRI  60
FSTREALGRH VKSHTVGAPL GRRRKKVPPA PETTAERDSM VLHGGGSEKL EAAGWPAKGK  120
KKRGKRMRMP PGHWGKSFFR GAALGGHPKD PRNAAAPLHL DLNSPPASGE EEEEEGGDGR  180
PSGGGGDVSN HTEGPRNAAA PPLPLDLNSP PPGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-