PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0003000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-other
Protein Properties Length: 116aa    MW: 13151.9 Da    PI: 9.7857
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0003000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-091475756
                     --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     f ++++ e+e++ ++  n+ p++e +  LA++            ++ +qV +WFqNrR+ ++
  Spipo11G0003000 14 FIPSEVMEMEACLQEtnNSLPDREVISTLAERFsasaeragkvIIQPKQVWNWFQNRRYAQR 75
                     66788999999999666999*********************999**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-11476IPR009057Homeodomain-like
SMARTSM003894.1E-4781IPR001356Homeobox domain
PROSITE profilePS500719.5721377IPR001356Homeobox domain
CDDcd000862.08E-51375No hitNo description
Gene3DG3DSA:1.10.10.602.9E-81480IPR009057Homeodomain-like
PfamPF000461.2E-61475IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGRPPNGGGP AFRFIPSEVM EMEACLQETN NSLPDREVIS TLAERFSASA ERAGKVIIQP  60
KQVWNWFQNR RYAQRAKMVK VPGKLNVSPS WDDSFQFRNV HASHSLGPWE LYWST*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805939.16e-46protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ72e-34SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D1Y0733e-47A0A1D1Y073_9ARAE; Homeobox-leucine zipper protein HOX22
STRINGXP_008805937.13e-45(Phoenix dactylifera)
STRINGXP_010275166.14e-45(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.39e-37sequence-specific DNA binding transcription factors;sequence-specific DNA binding