PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0010800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 246aa MW: 27097.4 Da PI: 10.9014

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0010800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	179	232	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW+++LH+rFv+ave LGG+e+AtPkt+lelm+vk+Ltl+hvkSHLQ+YR+ Spipo11G0010800 179 PRIRWSTTLHTRFVHAVELLGGHERATPKTVLELMDVKDLTLAHVKSHLQMYRS 232 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-28	177	233	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-15	177	233	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	179	232	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	182	231	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNTR PTTTSKRNSD GSINLDVGGG GHSHNHHHSR RSSPIDSLGS 60 STSPPSPSFR SLPSSWPAAA SLELTVSILA GQPVSKSTTI TTNGGEQDHH HCQDLPQRDL 120 QQQLQPITGV PVYYTRDASP FPFVQHQSTN HRRCRQPSHP DSAAPPRLRI PAKRIRRAPR 180 IRWSTTLHTR FVHAVELLGG HERATPKTVL ELMDVKDLTL AHVKSHLQMY RSVKSTDRPP 240 AFTGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-15	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-15	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-15	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-15	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-15	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738960.1	2e-50	probable transcription factor KAN2 isoform X1
TrEMBL	A0A1D1Z926	1e-53	A0A1D1Z926_9ARAE; Putative transcription factor KAN3 (Fragment)
STRING	XP_007158256.1	3e-49	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo11G0010800