PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0011300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 344aa    MW: 35692.1 Da    PI: 8.9345
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0011300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1703.7e-22275337163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN +L  e+ +++ke+++l se+
  Spipo11G0011300 275 ERELKRERRKQSNRESARRSRLRKQAECEELAQRVEALQQENATLTAEVTRIRKEYEQLLSEN 337
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.9E-15189IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.6E-39114244No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-17270333No hitNo description
PfamPF001701.0E-20275337IPR004827Basic-leucine zipper domain
SMARTSM003384.8E-22275339IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.576277340IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11278334No hitNo description
CDDcd147024.96E-25280330No hitNo description
PROSITE patternPS000360282297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGSGETAPPS KVPPKASSAQ EQTPTSSSPA TTAASSSAVV YPDWSGFQAY SPVPPHGFFP  60
PVVSSPQTHP YMWGTQGAHP FSPYAVPSPG GNPEAFSGGP EVDGKSSEGK EGSNLKRSNG  120
SLGNLNSIAG KSTKETGKPS GASANGAFSQ SDSGSEGSSE GSDADSQNDS QGKTAGGKDS  180
FDVRASRNGG ATRGSQNGSA RAPAHGSVTQ SMPMMPVLPA GAPGAVSGPT TNLNIGMDYW  240
GAPAIAPMRG KVHNTPGVLV SPGQSIPSEL RLQDERELKR ERRKQSNRES ARRSRLRKQA  300
ECEELAQRVE ALQQENATLT AEVTRIRKEY EQLLSENNSL KLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297RRSRLRK
2291298RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123157.11e-129bZIP transcription factor 68 isoform X8
SwissprotA0A3B6MPP51e-103BZP1D_WHEAT; bZIP transcription factor 1-D
SwissprotB6E1071e-103BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A1D1YAU41e-147A0A1D1YAU4_9ARAE; Transcription factor HBP-1a
STRINGXP_008788461.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-77basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]