PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0022900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

SRS

Protein Properties

Length: 332aa MW: 34407.2 Da PI: 8.4928

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0022900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	231.8	1.2e-71	99	260	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrel.....kskkqsal 86 r g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaakrrerqqqlaaa++++++s+ +++ kr+re ++ +++ Spipo11G0022900 99 RGGGMSCQDCGNQAKKDCMHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLAAAMQQQQQSQllvrGSDHIKRPREVsttlaCTRLPQTV 192 56899**************************************************9999988888998899999999985555434445566 PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + t+++s++s + ++ s+P+evss+avfrcvr+s+vdd ++++aYqtavsigGhvfkGiLydqG+++ Spipo11G0022900 193 TITTTTSTTSGRLETMGSFPSEVSSPAVFRCVRMSGVDDVDDQYAYQTAVSIGGHVFKGILYDQGPDS 260 666667777777777788**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-68	102	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.6E-28	104	146	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-27	211	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAGFSLGGGS GNDQIPTDSL FHYTSGGGGG SGGRQAEEIT TYTKGFELWQ QHQQRHHHHN 60 LYAAGLGMML DDPAGSGGGS GGSGSFGGSA GRGMRAGGRG GGMSCQDCGN QAKKDCMHMR 120 CRTCCKSRGF QCPTHVKSTW VPAAKRRERQ QQLAAAMQQQ QQSQLLVRGS DHIKRPREVS 180 TTLACTRLPQ TVTITTTTST TSGRLETMGS FPSEVSSPAV FRCVRMSGVD DVDDQYAYQT 240 AVSIGGHVFK GILYDQGPDS QFSSHPGDAS SSSAVAAAAT IATTGNPTTG AATPAVAAAA 300 AASSMLDPAT LYATPLSAFL AGTQFFPQPR P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400794.1	8e-99	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_009400795.1	8e-99	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	4e-75	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	M0SYH0	1e-98	M0SYH0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P14410_001	2e-99	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-57	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Spipo11G0022900

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]