PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0029600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 252aa    MW: 26357.9 Da    PI: 8.3887
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0029600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.2e-40311311100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae
  Spipo11G0029600  31 PCGACKFLRRKCVNGCIFAPYFDSEQgAAHFAAVHKVFGASNASKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 124
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+++
  Spipo11G0029600 125 LSYLQAH 131
                      **99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.87630132IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3831129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSGSNNSAGF GGAAGANGGG SGGGAGGGSG PCGACKFLRR KCVNGCIFAP YFDSEQGAAH  60
FAAVHKVFGA SNASKLLLHI PAHKRLDAVV TICYEAQARL RDPVYGCVAH IFALQQQVVN  120
LQAELSYLQA HLATLELPPP PPLQPPLPLA TAPPPHFSMS DLPSASALPA AIDLGALFDP  180
LVNLPWSFQQ QQQQQQQQQQ RQVELRQPGT SSSRALTENA ASGGGDLQAL AREFIERHRS  240
VTKQPLPPIS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-36271327111LOB family transfactor Ramosa2.1
5ly0_B7e-36271327111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.11e-97PREDICTED: LOB domain-containing protein 18-like
SwissprotO813232e-71LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A444F1133e-99A0A444F113_ENSVE; Uncharacterized protein
STRINGGSMUA_Achr5P11330_0014e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.11e-62LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]