PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0032300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 171aa    MW: 18454.5 Da    PI: 4.7106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0032300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-1013362247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     + W++Ia++++ gRt++++k++w+++
  Spipo11G0032300 13 R-WSKIAARLP-GRTDNEIKNHWNTH 36
                     4.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.608141IPR017930Myb domain
SuperFamilySSF466895.38E-91243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-131242IPR009057Homeodomain-like
PfamPF002491.9E-81236IPR001005SANT/Myb domain
CDDcd001672.95E-81337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MTSPPICIIV TTRWSKIAAR LPGRTDNEIK NHWNTHIKKK LVKLGIDPLT HEPLNKKLGS  60
LGPASESSDD QPPATGKVAH HTSAESASQH SEAPTTMDSL LDDDFPLVGS PWPSSEADGS  120
SAGMPAWDGE SDADWLLDYQ QLSVLEFGLE NLFGGDAREP ESKCHLPLTY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217388.13e-32protein ODORANT1
TrEMBLA0A1D1XF573e-40A0A1D1XF57_9ARAE; Protein ODORANT1
STRINGXP_008810422.12e-30(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-23myb domain protein 42