PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0042900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 149aa    MW: 15459.9 Da    PI: 11.9139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0042900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-211861245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +ie++  rqvtfskRr g++KKA EL+vLC+a++a ++fs+ gk
  Spipo11G0042900 18 KIESNDARQVTFSKRRSGLFKKAAELCVLCGAQAAAVVFSPGGK 61
                     69***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.189969IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-33968IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-281081IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-191131IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-193146IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-194667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEAGRRGGKG RRKIEIRKIE SNDARQVTFS KRRSGLFKKA AELCVLCGAQ AAAVVFSPGG  60
KPFAFGHPSV DLLLDRFLRL PASAPPPPPL GGPVRRTTGS RRPPIDGLGA EELSHLHAAV  120
TELRRSLPPA RGGGGGATAA ASPPNLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028767249.12e-31agamous-like MADS-box protein AGL62
RefseqXP_028774275.12e-31agamous-like MADS-box protein AGL62
TrEMBLA0A1D1ZCM67e-42A0A1D1ZCM6_9ARAE; Agamous-like MADS-box protein AGL61 (Fragment)
STRINGTraes_3B_530CCA7AE.14e-33(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-24AGAMOUS-like 61