PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0051800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 218aa MW: 23410.4 Da PI: 8.0493

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0051800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109.5	1.7e-34	8	64	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++lkcprCdstntkfCyynnys sqPr+fCkaC+r+Wt+GG+lrnvPvGg r+ + Spipo11G0051800 8 KAELKCPRCDSTNTKFCYYNNYSRSQPRHFCKACKRHWTAGGTLRNVPVGGCRKAGR 64 6789*********************************************98665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-21	7	64	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-30	10	62	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.972	11	65	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	13	49	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MADPLRQKAE LKCPRCDSTN TKFCYYNNYS RSQPRHFCKA CKRHWTAGGT LRNVPVGGCR 60 KAGRRPRTPH QPSSGKQTIK LPLSFPQEIF YPQPDFPDCG YMGSLPLHHG GIPATETETG 120 GGGCSFPVFL NLLGPEDLPP PPPAAAPWDL LQPTQPSFST VTTASSCQTA AESSSPPSSS 180 GCWDDLTGFL FSPLLEHPPP PPPPGLCQSK YSSSPAE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966121	7e-34	EU966121.1 Zea mays clone 291888 hypothetical protein mRNA, complete cds.
GenBank	KJ727686	7e-34	KJ727686.1 Zea mays clone pUT5625 C2C2-DOF transcription factor (DOF34) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1ZLD5	1e-36	A0A1D1ZLD5_9ARAE; Dof zinc finger protein DOF3.6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo11G0051800