PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0055400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family E2F/DP
Protein Properties Length: 356aa    MW: 38765 Da    PI: 6.8676
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0055400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.59.6e-28103185271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+++ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Spipo11G0055400 103 SGRGLRQFSMK---VCEKVQSkGRTTYNEVADELVAEfadpssslsspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 185
                      689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1255355IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.2E-4698190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-35102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-25104185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-21105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.62E-44190293IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.02E-41191296No hitNo description
SMARTSM011383.1E-71192353IPR014889Transcription factor DP, C-terminal
PfamPF087814.4E-40193305IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVTGGDRQQV DGDKNLRNPA RGHTSKSGWG TPAASEGQSP SSSGSPGSPS SRSEAAVTTP  60
ASESTSIRLN HLDIHGDDVG SPQGTITGKK KKRGARAVSG DKSGRGLRQF SMKVCEKVQS  120
KGRTTYNEVA DELVAEFADP SSSLSSPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWKGLPRTS LNDIEELKAE RIALRSRIET KTAYLRELED QYAGLQNLVE RNERLYNSGN  240
APSGGVGLPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDTYVL KEMGFCERQG  300
DDDARHALVN GGESSSSLSV YQHQTPTTPK PNEAGGKGPT PPIPGILKGR VKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-3696190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253993.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-146DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1D1YRG60.0A0A1D1YRG6_9ARAE; Transcription factor-like protein DPB
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP