PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0057400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 251aa    MW: 27777.6 Da    PI: 9.3641
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0057400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00017395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Spipo11G0057400 73 YTCSFCKREFRSAQALGGHMNVH 95
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-670100No hitNo description
PfamPF139121.7E-67396IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2473100IPR007087Zinc finger, C2H2
SMARTSM003550.00387395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGFSISIAVS PLGARLSGGR RISMERRIRD EHCNSNYSAI PKEPWRNGCL GGPAGDCTPG  60
NLFLGLSWPP RSYTCSFCKR EFRSAQALGG HMNVHRRDRA RMRESPPWEP PPCSNPDPIP  120
NPKPTPNRIL LLNLNSEPDP TYEDDLPAPR MPSSPICSLS HRSSSTSKKS SSEAFPSEPR  180
ESKNRKIAKA HCEVSGEKDH PAKDPTCKVL KRKKGDRGLH LEIEIKSADK EKLDLDLRLG  240
VVNYFDLPSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-136895229superman protein
2l1o_A1e-136895229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein