PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0058400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 260aa    MW: 27508.7 Da    PI: 8.2153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0058400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  Spipo11G0058400 109 YECKTCNKCFPSFQALGGHRASH 131
                      99**********99999998887 PP
2zf-C2H2140.00015170192123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Spipo11G0058400 170 HECSICGAEFSSGQALGGHMRRH 192
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.51E-9108131No hitNo description
PfamPF139128.3E-12108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.759109136IPR007087Zinc finger, C2H2
SMARTSM003550.082109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.51E-9165192No hitNo description
PfamPF139122.4E-13169194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993170197IPR007087Zinc finger, C2H2
SMARTSM003550.01170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
NNSSSGVSND YSRGIAKGKR TRRQRFQLLV APAATATPST SSSGEFYGSA GEEDDEEDMA  60
NCLILLAQGR ALEDSPPKPE GEGGGGKFNS RRLAEAATTT NGKAGFYVYE CKTCNKCFPS  120
FQALGGHRAS HKKPKPEEKK GIADEYSHSF PIPAASSPKS TFPNHKPRVH ECSICGAEFS  180
SGQALGGHMR RHRAAAAAAA GVVSEDQEIK KEKTILCLDL NLPAPSEDER GELPKSPAFA  240
FSGKQAIVFS ASALVGCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935821.11e-96zinc finger protein ZAT5
TrEMBLA0A2H3XQY65e-88A0A2H3XQY6_PHODC; zinc finger protein ZAT5
STRINGXP_008787454.18e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-47C2H2 family protein