PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0001100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 209aa    MW: 22591 Da    PI: 6.4965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0001100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-124570227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     ++++C+++++tG CkyG+ Ck++H++
  Spipo12G0001100 45 DQPECQYYLKTGRCKYGPACKYHHPK 70
                     689*********************96 PP
2zf-CCCH33.66.4e-1190115126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C f++ +G CkyG+ CkF H+
  Spipo12G0001100  90 PGQAVCTFYRTYGSCKYGSACKFDHP 115
                      57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6154371IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-104570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-74672IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-54970IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-589116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84989117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-690116IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-891115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-594114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTFVIYLNQG AMNSSDVRGQ DHLPNSNPQM QSGSILQASF PERPDQPECQ YYLKTGRCKY  60
GPACKYHHPK EKIASSNPGP IGPHMLPLRP GQAVCTFYRT YGSCKYGSAC KFDHPYAWPG  120
YYGYTAYPAL STWDPSSLPF ERSSSMNRTS PGTAAPEALK VAGGFPNPEM ASNEQTGADP  180
DSLEDQPPQA ISPSQTAPSS GSTQDHSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270054.19e-48PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
TrEMBLA0A1D1ZLZ32e-79A0A1D1ZLZ3_9ARAE; Zinc finger CCCH domain-containing protein 12 (Fragment)
STRINGXP_010270053.15e-46(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-28C3H family protein