PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0022900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 163aa MW: 18062.7 Da PI: 9.9801

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0022900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.9e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHe+Fv+av+qLGG+++AtPk il++m+vkgLt++hvkSHLQkYRl Spipo12G0022900 48 RQRLRWTHELHECFVDAVSQLGGPDRATPKGILRVMGVKGLTIYHVKSHLQKYRL 102 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.194	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-33	47	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.43E-18	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-26	49	103	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-10	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-9	134	155	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MYQPNPASRL NLIPSSLIVH DQRGEMSGNA VIPGNGGRNL NNSTLASRQR LRWTHELHEC 60 FVDAVSQLGG PDRATPKGIL RVMGVKGLTI YHVKSHLQKY RLAKYLPESS PDGIKAEQKE 120 PGSLLSTLEN SSGIQITEAL KLQMEVQKRL HEQLEDKFRV IS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-25	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-25	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-25	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-25	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00628	PBM	Transfer from PK10342.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010942496.1	4e-74	myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	6e-62	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1D1YRS5	1e-80	A0A1D1YRS5_9ARAE; Myb family transcription factor APL
STRING	XP_008782978.1	3e-73	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo12G0022900