PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0035300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 419aa    MW: 45723 Da    PI: 8.4895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0035300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12352397655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Spipo12G0035300 352 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 397
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-16349407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-12350399No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15351408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MYVSQAASKD LNMPFPMGPF KQGKDEAAVN HHHNHHQQMP TGLLRYRTAP SALLGEMCED  60
LLPHRSSSPE TDSMLARFMS PEIREHMEEK PSAAPTEQRN SQYMTTIDHE ALEAFQQPSG  120
GFPSSTSQLY HAQQPPQIPP RHSSSAATAA ESSYRVVSSM AMDDEQGKRG ANNSNLIRHS  180
SSPAGLFSHL NAENGYDSMR NMGGFRLGSD SAGEAALVGG RLKGQISFSA RPSSTSALMS  240
QISEMGRESM GGNSPDDGGL RHGNGGSRHY IPGFPVASWE DPSLLSHGFG GPKRPRDPSE  300
PQNGDARNPF PSLSHHFSLP KTSSEMAAIL QFQDAVPCKI RAKRGCATHP RSIAERVRRT  360
RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKDLQKQA KSLSESRANC TCSSKQKP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913124.11e-158transcription factor bHLH130
TrEMBLA0A1D1YA110.0A0A1D1YA11_9ARAE; Transcription factor bHLH130
STRINGXP_008776552.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-72bHLH family protein