PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0036200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 552aa    MW: 62141 Da    PI: 7.3767
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0036200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-10269309545
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Spipo12G0036200 269 KTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLTQLEQEL 309
                      6789************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-8263311No hitNo description
SMARTSM003381.9E-8265342IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.301267311IPR004827Basic-leucine zipper domain
PfamPF001706.9E-8269309IPR004827Basic-leucine zipper domain
CDDcd147081.84E-20269313No hitNo description
SuperFamilySSF579593.02E-7269311No hitNo description
PROSITE patternPS000360272287IPR004827Basic-leucine zipper domain
PfamPF141441.0E-29351425IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MYIKGSFVTL VELVGEQTTG GFAAHTAAVF QAVYGGVCLR REICWGRLAI SPTPRQLPTA  60
AICREVVSLT TSILTFCKVF PRDQVKGLPM DERVGSQTFA CFTPGTCASS PVAETGEWRK  120
RKSIAPLMVP FCGVDRESEE KDGDGTFSEE WRSMASKGIS KKATHSQQQQ AQAQEHQQIA  180
LGMVQPSSSL SGSFMNKDAG AYDLGELDQA LFLYLDGHEH PSVQEQKQTL NIFPSQPMHI  240
EPSTKQRDGR RKATTSSSEQ ESPKTFDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI  300
KLTQLEQELQ RARSQGVLIG GGLLGDQGIL SNASMFDTEY ARWLEEHHRL MWELRAAMQE  360
HVPENELKMF VDNCLTHYDE IIILKSIVAK SDIFHLVSGM WKSPAERCFM WLGGFRPSDL  420
IKILLSRIEP LTEQQMMGLY SLKTSTNEAE NSLTQGLEAL QRTLLDTITS DDLSYPSNMM  480
NYMEQMVVAM NKLSTLEGLV QQADNLRQQT LHQLHQMLTT HQAAQCFLVV AEYFHRLRAL  540
SSLWIARPRQ E*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701585.10.0bZIP transcription factor TGA10 isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1D1YAI50.0A0A1D1YAI5_9ARAE; TGACG-sequence-specific DNA-binding protein TGA-2.1 (Fragment)
STRINGXP_008800656.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-145bZIP family protein