PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0037300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 156aa MW: 17438.9 Da PI: 9.9942

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0037300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	48.4	2.1e-15	9	37	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk il+lm+ +gLt+ hvkSHLQkYR Spipo12G0037300 9 ATPKGILKLMESEGLTICHVKSHLQKYRA 37 9***************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-13	8	38	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-11	8	37	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-6	9	37	IPR009057	Homeodomain-like
Pfam	PF14379	6.7E-19	77	123	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MASSVNAGAT PKGILKLMES EGLTICHVKS HLQKYRAAKN IPDPQECASS SLRVAGGSKG 60 EGGSFGRLDR LDPKNRMHMA EALRLQLEVQ RRLHEQLEIQ RTIQKKFEEQ GRQLQKMFEQ 120 QERAARSLFE KQGPEVQAHD EGRGPEITHF PPKIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250\|UniProtKB:Q10LZ1}.
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by Pi starvation. {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265860.1	3e-39	PREDICTED: myb family transcription factor PHL5-like
Swissprot	B8ANX9	3e-32	PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
Swissprot	Q10LZ1	3e-32	PHR1_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBL	A0A1U8ASR3	7e-38	A0A1U8ASR3_NELNU; myb family transcription factor PHL5-like
STRING	XP_010265860.1	1e-38	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	8e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo12G0037300

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]