PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0037900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 367aa MW: 38800 Da PI: 4.4664

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0037900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.9e-08	12	44	4	37
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37 W t E++ll+ av ++G +W+++a +++ +R++ Spipo12G0037900 12 WGTREELLLASAVSRHGAQNWDSVAMEVQ-KRSP 44 99***************************.9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.319	4	62	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.81E-5	9	46	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	12	44	IPR001005	SANT/Myb domain
CDD	cd00167	6.07E-5	12	44	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-5	12	63	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MTRSADPDEE IWGTREELLL ASAVSRHGAQ NWDSVAMEVQ KRSPIAPLVT AQTCEKRFHD 60 LQRRFTAEKS GIDGEDSRGG GESDTISLLE ELRKLHVAEL RREVERYDVS ILSLQLKVKE 120 LKADRERTLS EEQHSGERAP DPPEAEGKKK GAESPTRSTE NAAADCASNG DIGRSCNESN 180 STGPKVAQDS DAATDRNPDG ATVGAGSRDP AAADPITGDE EKLAGEGSYN GSSDTVAKGT 240 EAATPADGPA ATNPANQTDA GDSGESMAES KGEETSKEGS DVQSSASPSR RRFSRRTAAS 300 GVSSGGDDAE ADEVSPPSKI IAAARSPPLA ASFLEAFRSS KLGCTFERRL ESQESLFTPI 360 FQRDDA*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MTRSADPDEE IWGTREELLL ASAVSRHGAQ NWDSVAMEVQ KRSPIAPLVT AQTCEKRFHD  60
LQRRFTAEKS GIDGEDSRGG GESDTISLLE ELRKLHVAEL RREVERYDVS ILSLQLKVKE  120
LKADRERTLS EEQHSGERAP DPPEAEGKKK GAESPTRSTE NAAADCASNG DIGRSCNESN  180
STGPKVAQDS DAATDRNPDG ATVGAGSRDP AAADPITGDE EKLAGEGSYN GSSDTVAKGT  240
EAATPADGPA ATNPANQTDA GDSGESMAES KGEETSKEGS DVQSSASPSR RRFSRRTAAS  300
GVSSGGDDAE ADEVSPPSKI IAAARSPPLA ASFLEAFRSS KLGCTFERRL ESQESLFTPI  360
FQRDDA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943521.1	4e-93	uncharacterized protein LOC105061234 isoform X1
TrEMBL	A0A1D1YLA4	1e-126	A0A1D1YLA4_9ARAE; Transcription factor GTE9
STRING	XP_010257462.1	1e-72	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3181	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	5e-34	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo12G0037900