PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0038600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 198aa MW: 21626.3 Da PI: 8.5133

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0038600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+ksFs+ L H + H Spipo12G0038600 33 YLCQICSKSFSSAQALGGHKNAH 55 56************999998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.94E-6	30	59	No hit	No description
Pfam	PF13912	1.2E-9	33	57	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.593	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAPPNRVEKM KVMARLQSQR SLRIRPSEEE PEYLCQICSK SFSSAQALGG HKNAHRRDRE 60 ETRKELAGAA PDASRPPPPP AGYPCMYLVA PQQAVFVPRR GFSHQVSGPG LVLPPGVWPS 120 KHFPVGEGSL TVKTAGFSRE ASSSSSKKPG AALHAEQGTR QVSHHSSQSV MMMPTFNHFH 180 NGNEEEEEDE PDLTLHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	4e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo12G0038600