PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0039800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 261aa    MW: 28169.1 Da    PI: 4.1774
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0039800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.53.3e-09161211454
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      +k+ rr ++NR +A +sR+RKk++++ Le k+k + +e ++L+  l     
  Spipo12G0039800 161 SKKRRRQMRNRDSAMKSRERKKMYVKDLEMKSKFMASEVRRLQHALHCCAA 211
                      799***********************************9999877765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-7157222IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.496160223IPR004827Basic-leucine zipper domain
PfamPF001709.4E-8161218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.5E-11162221No hitNo description
SuperFamilySSF579591.77E-10162220No hitNo description
CDDcd147043.62E-15163214No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGDGEGPAEE DVLDGLDFLD GFCLDFDGTD DLYLHLFQES SPVGGPSPER AAASAGSMSP  60
QTISEIERFL MEDGGDFREV DQPLPDSFFA DVFLSGSDDG SAESAVSSGD DATPPANAVQ  120
EKGEEDVEPD ASAAVSGAGF ERQTNADDSD SKGDEEEDSL SKKRRRQMRN RDSAMKSRER  180
KKMYVKDLEM KSKFMASEVR RLQHALHCCA AENMALRQSL TKAKALSAPL AIQESAVLFV  240
GKISFAVFFP FASFLTSFSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162181KRRRQMRNRDSAMKSRERKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YRC13e-46A0A1D1YRC1_9ARAE; Transcription factor HY5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-12basic region/leucine zipper motif 60