PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0042600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 220aa    MW: 23438.2 Da    PI: 8.6181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0042600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-2072121255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +grW AeIrd    +  r r++lg+f++aeeAa+a++aa++ l+g
  Spipo12G0042600  72 RYRGVRKRP-WGRWSAEIRD----KiGRCRHWLGTFDSAEEAARAYDAAARTLRG 121
                      7********.**********....3335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-3372135IPR001471AP2/ERF domain
PfamPF008476.8E-1472121IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2172129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2872128IPR001471AP2/ERF domain
CDDcd000181.89E-1672128No hitNo description
PROSITE profilePS5103222.36672129IPR001471AP2/ERF domain
PRINTSPR003673.0E-107384IPR001471AP2/ERF domain
PRINTSPR003673.0E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEASMLPLSI VRPENYEAVG AAGSPPVLEG IAAVVGYYVL FGDKEKTDEP PPASPSTDEQ  60
KLEGEFGGGV RRYRGVRKRP WGRWSAEIRD KIGRCRHWLG TFDSAEEAAR AYDAAARTLR  120
GSKARTNFGV PSSFSIPVPM SSSSSPSSSS GDKNSATAAA AATACSEAGR RRKGCDEAEN  180
GRRCKVVSSV TQLFGSPMDG SVVQSVKRIP FELQEVVFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17721361477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026378694.15e-42ethylene-responsive transcription factor ERF084-like
TrEMBLA0A3S3MVC99e-48A0A3S3MVC9_9MAGN; Ethylene-responsive transcription factor ERF084
STRINGEMJ187674e-41(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2502245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-13ERF family protein