PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0053100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 271aa    MW: 29856.6 Da    PI: 5.6464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0053100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-0818412146
                     TT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqk 46
                     + +W+ Ia+ ++ gRt++++k++w++
  Spipo12G0053100 18 N-RWSIIAAQLP-GRTDNDIKNYWNT 41
                     3.5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.864147IPR017930Myb domain
SuperFamilySSF466894.21E-81648IPR009057Homeodomain-like
CDDcd001671.16E-61643No hitNo description
Gene3DG3DSA:1.10.10.603.4E-121847IPR009057Homeodomain-like
PfamPF002492.7E-61841IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVPRQPQQLR ISSGRDENRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR RKEPRNRRFP  60
STAEESKEVA DEMNYNAPSQ GLSASALERM QLQMKLHGLQ HPLAFHNNPA LWPKFHPLCG  120
RIPMEDTAVQ QAPDTAAMEE PCERVALPNG SQISHSMVGS NLGDVEASSL TGFSSPPSSM  180
VLNVEQPDAG FGSAAALQAE LSTLIYGKVD YLPEIHPADS FKETSSIKDG VVWCPPDNGF  240
GEKSALTSWD SPSLLQSWNL LQDYVPGYDV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-26myb domain protein 36