PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0056500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 206aa    MW: 22581.4 Da    PI: 7.8222
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0056500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP721.1e-22158205148
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                      +C+vegC+adl++ak+yhrrhkvCe hsk++vv++ g++qrfCqqCsr
  Spipo12G0056500 158 QCHVEGCKADLTRAKNYHRRHKVCELHSKSAVVIIGGMHQRFCQQCSR 205
                      5**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-23153205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.469156205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-21157205IPR004333Transcription factor, SBP-box
PfamPF031107.3E-17159205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNSFNPTMGA YDPPRIMSFV GLESGGRVGG DRSEKQQQLW DWEPPPVHPP SETAHYYQFP  60
PFFESAAIPN ASFYDCAASS FPPLATASST TGGGCPLYSV VPGDYRGGPV KREDDWGAGG  120
IALNLGHRMY FPTSDALGVE RLFQRSTAIY QVSTHVPQCH VEGCKADLTR AKNYHRRHKV  180
CELHSKSAVV IIGGMHQRFC QQCSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A3e-19159205652squamosa promoter-binding protein-like 12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.22e-29squamosa promoter binding protein-like 8