PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0063000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 1132aa    MW: 125257 Da    PI: 6.6515
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0063000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Spipo12G0063000 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQVKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLVAGDSVLFI--RD 216
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  Spipo12G0063000 217 EKQQLLLGIRRA 228
                      88889****997 PP
2Auxin_resp118.94e-39253336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aaha +++s+F+v+YnPras+seFv+++ k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nSkWr+L+
  Spipo12G0063000 253 AAHAYANHSPFTVFYNPRASPSEFVIPLVKYNKAIYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSKWRNLQ 336
                      79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-43117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-42121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-20126218No hitNo description
PfamPF023621.1E-21127228IPR003340B3 DNA binding domain
SMARTSM010192.8E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224127229IPR003340B3 DNA binding domain
PfamPF065076.5E-34253336IPR010525Auxin response factor
PfamPF023098.8E-99951082IPR033389AUX/IAA domain
PROSITE profilePS5174527.839971081IPR000270PB1 domain
SuperFamilySSF542771.18E-710101076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MKAAGSTSAP LPAGGERRSI NPELWYACAG PLVNLPPVGS LVVYFPQGHS EQVAATMLKD  60
ADAQIPNYPN LPWKMVCLLH SVTLHADPET DEVYAQMTLQ PANTSDKEAF LASDSSLKVN  120
RPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELQVK DLHDNVWTFR  180
HIYRGQPKRH LLTTGWSLFV SGKRLVAGDS VLFIRDEKQQ LLLGIRRASR QPTNISSSVL  240
SSDSMQIGIL AAAAHAYANH SPFTVFYNPR ASPSEFVIPL VKYNKAIYSN QLSLGMRFRM  300
MFETEESGTR RYMGTITGIS DLDPVRWKNS KWRNLQVGWD ESTAGERRNR VSMWEIEPVQ  360
APFFICPPPF FRSKRPRQPG MPDDDSSDME SLFKRAVPWL GDEICLKDSP GQNAGIHGLS  420
LVQWMNMQNP SLAGSALQPD YLRSMAGPVV QNYPASDISK QLSLQAQMMQ QSNMQFGVPK  480
PLLQHTQQVD QLSKLAVPQD QSGAISIPQQ QMQQINQQQR QQLLASEALP LNQSQSNVLQ  540
SQMIVQSHQL QQQQQPQIQN HQALPPSSSP LNLPQQQQQQ QQFRLLQQPQ QQHLLLLQPQ  600
QQQQQQQLQG RMPAQLLHHQ ATQQTQLSEQ QIHLQLLHKL QQQQQQQQHL LGQPPFQQQQ  660
VPEQQKVVPL DQQTPPLPNL QSLPQQHAAL NQATKNPPAG MMQYPQAMQH QLQQKFQQPQ  720
AAPTEMMELA APQSSVNLLS AAGSGFLASR GTQSVLTEDV PSCSTSPSTN NCPAPPPAAI  780
GGKTQQQQQH GMATAEEMSQ SAVTIMSSAS FADIKPSISI AKLQQPSAVP TPRPQHQAPF  840
APQQAYVNNA AHMDYLDASS SGASACLPQT DAQELQQSFP LSSFSQQPSF FRDGGQGSEV  900
PASDPRNNVL FGVNIESPLR IPIPSDHPLL EKGVDSGRDY HNHLTSDTTQ AELSSSMVSQ  960
SFGVPDVGLN SIDSTINDGS LLNKCSWAPP PQFQRMRTYT KVYKRGAVGR SIDITRYSGY  1020
DDLKQDLARM FSIEGQLEDR QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCVRILSPQ  1080
EVQQMSLDGE IAGNSGLPNQ ACSSSDGGNA WRGGQCDQNS NPSAGSYGHI D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651335744388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A3S3MFK70.0A0A3S3MFK7_9MAGN; Auxin response factor
STRINGXP_010259931.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19