PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0064400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SBP
Protein Properties Length: 220aa    MW: 23713.4 Da    PI: 6.0842
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0064400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP66.65.2e-21172219148
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                      +CqvegC+ dl++ak+yhr+h+vCe hsk+p v+v+g+e rfCqqCsr
  Spipo12G0064400 172 RCQVEGCDLDLASAKDYHRKHRVCESHSKCPRVIVAGRECRFCQQCSR 219
                      6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-22166219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.067170219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-20171219IPR004333Transcription factor, SBP-box
PfamPF031104.0E-16173219IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDWNSRPPSH WDWESLGLSH AKTGDHPREA LDLEWGMGDG SLCSSAAAAA AGFCSACDMG  60
NGGCSSKSST IDFSVTEEPN PPGINLEPPT PKHPDEMKDL ARTEHTGISA EMVESVGSAE  120
PFIGLKLGKR TYFEDVCPEN LVKNASFSSD PAASSPKVKR SRASLQGEQV SRCQVEGCDL  180
DLASAKDYHR KHRVCESHSK CPRVIVAGRE CRFCQQCSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A5e-13173219652squamosa promoter-binding protein-like 12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252163.18e-59PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_010252164.18e-59PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
TrEMBLA0A1D1XFK25e-69A0A1D1XFK2_9ARAE; Squamosa promoter-binding-like protein 12
STRINGXP_010252163.13e-58(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-31squamosa promoter binding protein-like 2