PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0066300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 249aa MW: 27436.9 Da PI: 6.673

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0066300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.1	9.3e-29	192	242	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt eLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQ Spipo12G0066300 192 KQRLRWTLELHEQFVEAVRKLDGPEKATPKSVLKLMDVEGLTIYHVKSHLQ 242 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.032	189	249	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-14	190	243	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-26	190	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-22	192	244	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-8	194	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
THKKRKALQK KGLCPAILLP RFSRSSTFCT SQFSSSSPVS EAAHSQLKIL PFLPSLPKTE 60 QPTSSAQSSS SPLILRGSLR SVSGESDDPD ALIKGLLNLS QDASDGSFHE ENYANDCVTF 120 DERLELQILS DELGMAIAGS EESPRLDEIY DKPQMLSKSN EISQPEAQHD GPTNHALTCS 180 AHSTSGSTHT NKQRLRWTLE LHEQFVEAVR KLDGPEKATP KSVLKLMDVE GLTIYHVKSH 240 LQVLLRICF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	192	242	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020245886.1	3e-65	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Refseq	XP_020245964.1	7e-66	protein PHOSPHATE STARVATION RESPONSE 3 isoform X2
Swissprot	Q6YXZ4	2e-54	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A1D1XI38	6e-80	A0A1D1XI38_9ARAE; Myb family transcription factor APL
STRING	GSMUA_Achr10P23260_001	3e-61	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	4e-44	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo12G0066300

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]