PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0002500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 351aa    MW: 38037.1 Da    PI: 9.5332
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0002500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.12.2e-14304347548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      +r+rr++kNRe+A rsR+RK+a++ eLe++   L++eN +Lk+e
  Spipo13G0002500 304 RRQRRMMKNRESAARSRARKQAYTVELEKELTFLKEENARLKDE 347
                      79***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-7300350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.001302347IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-14304347No hitNo description
SuperFamilySSF579591.44E-10304347No hitNo description
PfamPF001702.9E-12304347IPR004827Basic-leucine zipper domain
CDDcd147077.72E-24304349No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTPAVGDDGA TGVGVREDGG ETLDSEALAT GGSEGFPLVR QQSLLSLTLD EFQNAVRGPG  60
KSFGSMNMDE ERRRRRQRRG ELPARQKDLL SVPAPLSRKT VEEVWSDIHW DRREPPPAMA  120
PPPGNTQDMG RSQRQPTFGE MTLEDFLVKA GVVREGGHLP CSSPLPLKQL PLHTQQLHQH  180
QQNGYGLPGG YQTASGHHPE YGHVGGEENT GAADRSYRNY HPRQVLQPGG AGNSYGGSGG  240
ERTGNGHAVA ASPLSPASSE SLDRSNPKSG PWDSGGPRRG GGGGSAPWGR KRVLDGSTEK  300
VVERRQRRMM KNRESAARSR ARKQAYTVEL EKELTFLKEE NARLKDEQVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178RRRRRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907582.16e-66protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_010907583.16e-66protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_010907584.16e-66protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_029117382.16e-66protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_029117383.16e-66protein ABSCISIC ACID-INSENSITIVE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38303558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.11e-19bZIP family protein