PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0002700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 336aa    MW: 37499.7 Da    PI: 7.9558
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0002700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.4e-103059433
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
                      k  rr+++NReAAr+sR+RKka++ +Le+
  Spipo13G0002700 30 AKTLRRLAQNREAARKSRLRKKAYVRQLET 59
                     6889************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-52798IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8292973IPR004827Basic-leucine zipper domain
PfamPF001703.1E-73060IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.4E-73170No hitNo description
SuperFamilySSF579599.14E-63172No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
PfamPF141441.2E-27107181IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGDPSRGAP PWGASHQRKF ISNDGKPLDA KTLRRLAQNR EAARKSRLRK KAYVRQLETC  60
RLKLAQMEQD LQRARSQGLF SGSGVSPGAA IFDMEYARWL DEDRKLMSEL GTGLRGQLAD  120
DDLRVVVDEC LAHHDEIFQL KAVAASSDVF HIITGMWASP AERWFLWMGG FRPSEILKML  180
IPQLDPLTEQ QLAWICSLQE SSQQAEEALS QGLEQLQQSL TDTVAGGPLN DGANVGDYMA  240
QMALALQKLS NLEGFVHQAD NLRQQTLQQM RKILTVRQAA RCFLAVGEYH ARLRSLGSLW  300
VSRPQIENSP EDALGCPATS HFHQIHPHRP PLGRF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804825.31e-155transcription factor LG2
SwissprotQ53Q701e-140TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBLA0A2H3YWG11e-153A0A2H3YWG1_PHODC; transcription factor LG2
STRINGXP_008804825.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-129bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  3. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]