PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0004800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 166aa    MW: 18615.3 Da    PI: 10.2981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0004800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.82.4e-29298195
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92
                     f+k ltpsdv+k++rlv+pk++ae++   +g+  ++  l++ede g+ W+++++y+ +s++yvltkGW++F ++++L +gD+v+F++ +   + + 
  Spipo13G0004800  2 FEKPLTPSDVGKLNRLVIPKQYAERYfplDGD--SGLLLSFEDELGKIWQFRYSYWTSSQSYVLTKGWSRFIREKRLHAGDVVLFQRRRCyAGDRI 95
                     99*************************77656..6779************************************************6554455555 PP

                     EEE CS
               B3 93 vvk 95
                     +++
  Spipo13G0004800 96 FIG 98
                     555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.19E-29188No hitNo description
Gene3DG3DSA:2.40.330.105.6E-371103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-28289IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.5E-192103IPR003340B3 DNA binding domain
PROSITE profilePS5086314.1982103IPR003340B3 DNA binding domain
PfamPF023621.4E-262100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LFEKPLTPSD VGKLNRLVIP KQYAERYFPL DGDSGLLLSF EDELGKIWQF RYSYWTSSQS  60
YVLTKGWSRF IREKRLHAGD VVLFQRRRCY AGDRIFIGWK RRAGQRGHLE AHVAARLGQA  120
YNPAAATSPP CPMTGGDTHL PSPTAGGSSR MLRLFGVNLR CGPVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-4411027113B3 domain-containing transcription factor NGA1
5os9_B5e-4411027113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820040.14e-60PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI37e-54Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2I4EKW49e-59A0A2I4EKW4_JUGRE; B3 domain-containing protein At2g36080-like
STRINGXP_008799673.12e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-56B3 family protein